Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs3821779 chr3:9847431 C/G 1.76E-6 116 35.67 52.58 25.83 KM Plot
THYM rs3821940 chr4:6286711 C/A 5.0E-7 114 25.83 42.73 50.1 KM Plot
THYM rs3821941 chr4:6286954 A/G 5.0E-7 114 25.83 42.73 50.1 KM Plot
THYM rs3825691 chr14:78333955 T/C 1.36E-5 119 22.5 50.07 38.13 KM Plot
THYM rs3825692 chr14:78310411 T/C 6.5E-5 119 25.83 38.48 50.03 KM Plot
THYM rs3832180 chr3:147129057 AAC/A 5.15E-5 116 46.43 35 25.83 KM Plot
THYM rs3842711 chr12:121613601 G/GA 2.42E-5 116 48 46.07 24.87 KM Plot
THYM rs3855908 chr11:3609405 G/A 0.0003 118 40.67 51.53 16 KM Plot
THYM rs3856467 chr2:10917594 G/A 0.000183 115 42.9 38.58 62.72 KM Plot
THYM rs3875144 chr19:41285377 G/A 3.4E-13 118 44.38 35.13 6 KM Plot
THYM rs3904193 chr10:93287580 G/T 7.84E-9 119 46.27 34 7.48 KM Plot
THYM rs3904194 chr10:93287597 T/C 8.02E-9 119 45.87 36.9 7.48 KM Plot
THYM rs3912996 chr5:180122392 T/C 0 118 46.27 30.27 4.13 KM Plot
THYM rs391381 chr19:49237930 T/G 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs3915291 chr7:29706884 G/A 3.55E-13 119 37.63 48.18 6 KM Plot